Unique JaPBe features that always work just like they should (atleast for me) such as:
1. It always makes sure the variables, procedues, and etc... have the correct Case of capital letters and lower letters. True it can be annoying at times but after you get used to it, it is a great feature.
2. Project files which let you load several files by opening one, JaPBe calls them filelists.
Unique PureBase IDE features:
1. Nice Sidebar (Toolspanel), the most important part about it is the Explorer which is unique to the PB IDE.
2. Nice debugger but I think it is not unique to the PB IDE, I personaly like the Variable Viewer, whoever made that did a nice job.
3. Breakpoints, dont use them much but I like having them.
The features that both have:
1. Syntax highlighting, although JaPBe is better at customizing it
2. Autocomplete (JaPBe seems to do a better job at it, I probably do not have the settings in PB IDE set correct to have the same effect)
3. Error window at the bottom, both seem to work well but I think PB IDE does a better job, not sure though.
4. Plugins both have them, I wish it was easier to understand how to make your own and what is possible with them or if there is any limitations.
5. Both load quickly, PB IDE might load faster.
GPI, the maker of JaPBe, have not seen him post for a long time now. So I am assuming that JaPBe is abandoned.
Freak, the maker of the new PB IDE is active and a great programmer, I think he will continue to improve the new IDE. And hopefuly someday (soon

I know I did not metion all the features of either JaPBe or PB IDE, nor do I know them all. But I just wanted to post this as something I would like to see in the future. Maybe the PB IDE will be open source and people can add to it (of course it would be hard to track everything done to it or to keep it bug free).
What do you guys think?